Best Accounting Software for Multiple Businesses Reviewed

Zara Chechi

28 Nov 2025

Reading time:

8

This definitive guide helps business leaders and finance managers navigate the selection and implementation of multi-entity accounting software. It explores the strategic shift from chaotic spreadsheets to a unified system, detailing essential features, offering a practical selection framework, and outlining best practices for a seamless transition, ultimately positioning the finance function as a strategic driver of growth.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

The scene is a familiar one in the finance departments of ambitious, growing businesses. It’s the second week of the month, and the CFO is staring at a monitor displaying a dizzying web of spreadsheets. One tab holds the P&L for the UK manufacturing arm, another the balance sheet for the new Irish sales entity, and a third contains a hastily assembled list of intercompany loans. This is "spreadsheet spaghetti"—a chaotic, error-prone, and unsustainable method of financial management that signals a business has outgrown its foundational systems.

This operational drag is more than just an inconvenience; it’s a strategic liability. In a world demanding real-time data and agile decision-making, relying on a patchwork of disconnected ledgers is like navigating a motorway in a horse and cart.

If this picture resonates, you are at a critical inflection point. The solution lies not in a more complex spreadsheet, but in a strategic leap forward: adopting a unified multi-entity accounting platform. This article is your guide through that journey. We will dissect the strategic imperative for a centralised system, identify the non-negotiable features you need, provide a framework for selecting the right partner, and lay out a blueprint for a successful implementation. This is about transforming your financial chaos into a streamlined, strategic asset that fuels, rather than fetters, your growth.

Escaping the Multi-Entity Maze: The Case for a Unified Financial Core

For a single, small business, standard accounting software works perfectly well. But the moment a second legal entity is formed—whether through acquisition, international expansion, or strategic separation—the complexity multiplies exponentially. Suddenly, you are not just managing one business; you are managing a group, and the limitations of a single-entity mindset become painfully clear.

The primary strategic advantage of a purpose-built multi-entity system is the creation of a single source of truth. Instead of manually exporting data and wrestling with VLOOKUPs to consolidate figures, you gain immediate, top-down visibility across the entire organisation. A consolidated P&L, balance sheet, or cash flow statement is no longer a week-long project but the result of a single click. This real-time visibility empowers leadership to make faster, more informed decisions based on a complete and accurate picture of the group’s health.

However, the need for specialised software is driven by the specific challenges inherent in a multi-entity structure:

  • Intercompany Transactions: This is the Gordian Knot of group accounting. When one entity sells goods to, provides services for, or loans money to another, these transactions must be recorded accurately on both sides and then eliminated during consolidation to avoid artificially inflating group revenue and assets. Manually tracking and reconciling these entries is a high-risk, time-consuming task. A dedicated system automates this process, ensuring accuracy and creating a crystal-clear audit trail.

  • Consolidated Financial Reporting: Producing consolidated financial statements that comply with standards like IFRS or UK GAAP is a formidable challenge without the right tools. The software must be able to handle complex ownership structures (e.g., non-controlling interests) and automate the consolidation process, saving hundreds of hours and reducing the risk of material misstatement.

  • Compliance and Control: With multiple entities come multiple compliance obligations, from different VAT jurisdictions to varying statutory reporting requirements. A unified system centralises control, allowing you to manage tax settings, reporting formats, and approval workflows on a per-entity basis while maintaining group-level oversight. This simplifies audits and ensures consistency in governance.

  • Shared Costs and Centralised Services: How do you allocate the cost of the central IT department or the group marketing budget across the operating entities? Specialised software facilitates sophisticated cost allocation rules, ensuring that shared expenses are distributed fairly and logically, providing a true picture of each entity’s profitability.

Building Your Financial Command Centre: Non-Negotiable Features

When evaluating software, it's easy to get lost in a sea of features. To cut through the noise, focus on the core capabilities that directly address the challenges of multi-entity management. These are not just nice-to-haves; they are the architectural pillars of an effective system.

  • Robust Multi-Currency Management: For any group with international operations, this is paramount. The system must do more than simply convert transactions at a daily rate. It needs to automatically handle realised and unrealised foreign exchange gains and losses, revalue accounts at period-end, and allow you to produce reports in both the entity’s local currency and the group’s base currency.

  • Automated Intercompany Eliminations: This is arguably the most critical feature. The software should provide a dedicated intercompany transaction module that automatically posts corresponding entries in each entity’s ledger. During consolidation, it should then identify and eliminate these reciprocal accounts, ensuring the consolidated view is clean and accurate without manual journal entries.

  • A Flexible, Segmented Chart of Accounts: A one-size-fits-all chart of accounts won’t work. The ideal system allows for a global, group-level chart of accounts for consistency, but also enables you to add entity-specific accounts. Furthermore, it should support dimensional analysis (or ‘tagging’). This allows you to tag transactions by department, project, location, or any other custom dimension, providing incredibly granular reporting across the entire organisation.

  • Automation in Core Processes: Beyond consolidation, look for automation that streamlines daily operations. This includes automated bank reconciliations that can handle dozens of accounts across the group, and intelligent accounts payable (AP) automation that can capture invoice data, route it for approval based on entity-specific workflows, and post it to the correct ledger.

  • Granular Security and Role-Based Access: You need absolute control over who can see and do what. The finance manager for the German subsidiary should not be able to view the payroll data for the UK parent company. The system must offer sophisticated, role-based permissions that can be configured down to the entity, transaction, and even field level, ensuring data integrity and confidentiality.

Navigating the Marketplace: A Strategic Framework for Selecting Your Software

Choosing your financial platform is a long-term commitment. The decision should be driven by a strategic framework, not just a feature comparison checklist.

  1. Prioritise Scalability: The system you choose today must support your vision for tomorrow. Ask potential vendors hard questions. How does the system perform with ten times the transaction volume? How easy is it to add a new legal entity with a different currency and tax regime? A scalable solution grows with you, avoiding the painful prospect of another migration in just a few years.

  2. Scrutinise Integration Capabilities: Your accounting software is the heart of your financial tech stack, but it cannot operate in a vacuum. It must have a robust, well-documented API (Application Programming Interface) to connect seamlessly with your other critical systems, such as your Customer Relationship Management (CRM), Enterprise Resource Planning (ERP), and payroll platforms. This creates a connected digital ecosystem, eliminating data silos and manual re-entry.

  3. Evaluate Reporting and Analytics: The ultimate purpose of all this data is insight. Demand more than just standard, static reports. A modern platform should offer a customisable reporting engine and interactive dashboards that allow you to drill down from a consolidated group view into the individual transactions of a specific entity. Can you build a real-time KPI dashboard for your board that tracks cash flow, departmental spend, and profitability by business unit across the entire group? If not, keep looking.

  4. Consider the Practicalities:

    • Pricing Models: Understand the total cost of ownership. Most modern solutions are Software-as-a-Service (SaaS), with pricing often based on the number of users, number of entities, and feature tiers. Be wary of hidden costs for support, API access, or transaction volumes.

    • Customer Support: During implementation and beyond, strong support is invaluable. Is a dedicated account manager included? Is support available 24/7? Look for a partner invested in your success, not just a vendor selling a licence.

    • Social Proof: Don’t just rely on the sales pitch. Ask for case studies from companies of a similar size and complexity. Check independent review sites and, if possible, ask to speak with one or two of their existing customers.

Mapping the Terrain: Key Players in the Multi-Entity Accounting Arena

The market is diverse, with solutions tailored to different stages of business growth. There is no single "best" platform, only the one that is best for you.

  • For Small but Growing Groups: Platforms like Xero and QuickBooks Online Advanced are popular starting points. They allow you to manage multiple companies under a single login, but their consolidation capabilities are often limited. Consolidation typically requires manual processes or the use of third-party reporting add-ons. They are excellent for managing a handful of simple domestic entities but can struggle with complex intercompany transactions and multi-currency consolidations.

  • For the Mid-Market Powerhouses: This is the sweet spot for true multi-entity accounting software. Sage Intacct and NetSuite OneWorld are leaders in this space. They were built from the ground up to handle group structures, offering powerful consolidation engines, advanced multi-currency features, and robust automation and integration capabilities. These platforms are designed for organisations with complex needs, multiple international subsidiaries, and a high volume of intercompany activity.

  • For the Enterprise and ERP-Integrated: For large, multinational corporations, accounting is often one module within a broader ERP system. Solutions like SAP S/4HANA, Oracle Fusion Cloud ERP, and Epicor ERP provide deep, integrated financial management capabilities as part of a wall-to-wall business management suite. Other versatile players like Zoho Books, part of the comprehensive Zoho One suite, can also serve multi-entity organisations, particularly those already invested in its ecosystem.

Blueprint for Success: A Phased Approach to Flawless Implementation

The most powerful software in the world is useless without a successful implementation. This is not an IT project; it is a business transformation initiative.

  • Plan Meticulously: Begin with a clear project plan that outlines goals, timelines, and responsibilities. Critically, this is the time to clean up your data. Migrating messy, inaccurate data into a new system is a recipe for disaster. Use this opportunity to standardise your chart of accounts and cleanse supplier and customer records.

  • Secure Internal Buy-In: The finance team must champion the change. Provide comprehensive training that focuses not just on how to perform tasks, but why the new system is an improvement. Demonstrate how it will eliminate tedious manual work and free them up for more valuable analytical tasks.

  • Leverage Quick Wins: From day one, showcase the system’s value. Implement features like a self-service supplier portal to reduce administrative queries or configure automated approval workflows to speed up the procurement process. These early successes build momentum and reinforce the value of the investment.

  • Customise for Insight: Work with your implementation partner to configure the custom reports and dashboards that leadership needs. When the CEO can log in on day one and see a real-time, consolidated view of the business, the project is immediately seen as a strategic success.

The Future-Ready Finance Function: What's Next for Multi-Entity Management?

The evolution of this technology is relentless. Looking ahead, two key trends are shaping the future of consolidated finance: artificial intelligence (AI) and advanced analytics.

We are moving beyond simple automation. Machine learning algorithms are now being deployed to detect anomalies in intercompany transactions, flagging potential errors or even fraud in real-time. AI is also beginning to automate the narrative aspects of reporting, generating draft commentary for management accounts based on financial data and trends.

This shift culminates in the evolution of the finance function itself. Armed with powerful analytics tools drawing from a unified, real-time data source, finance leaders can move from being historical record-keepers to forward-looking strategic partners. They can run sophisticated "what-if" scenarios, model the impact of acquisitions or currency fluctuations on the entire group, and provide the predictive insights that drive genuine competitive advantage.

Conclusion: From Anchor to Engine

Adopting dedicated multi-entity accounting software is a defining moment in an organisation's growth trajectory. It is the point where you consciously decide to replace fragmented complexity with integrated clarity. The journey requires careful planning, strategic selection, and committed execution, but the rewards are transformative.

By moving to a unified platform, you gain more than just efficiency. You gain control, insight, and a scalable financial foundation upon which you can build your future ambitions. You create a digital nervous system that provides a real-time, holistic view of your entire enterprise.

So, ask yourself the critical question: is your current financial system an anchor, holding your group back with the dead weight of manual processes and disconnected data, or is it the engine that will power your future growth? The choice you make today will determine the agility and success of your business tomorrow.

Frequently asked questions

At what point should my business invest in multi-entity accounting software?

At what point should my business invest in multi-entity accounting software?

At what point should my business invest in multi-entity accounting software?

Can I not just use multiple subscriptions of a small business platform like Xero or QuickBooks?

Can I not just use multiple subscriptions of a small business platform like Xero or QuickBooks?

Can I not just use multiple subscriptions of a small business platform like Xero or QuickBooks?

What is the single most critical feature to look for in this type of software?

What is the single most critical feature to look for in this type of software?

What is the single most critical feature to look for in this type of software?

How can I ensure a smooth implementation process?

How can I ensure a smooth implementation process?

How can I ensure a smooth implementation process?

How is new technology like AI changing multi-entity accounting?

How is new technology like AI changing multi-entity accounting?

How is new technology like AI changing multi-entity accounting?

This guide is provided for general informational purposes only and does not constitute legal, tax, financial, or other professional advice from ALTERY LTD or its affiliates. It should not be used as a substitute for advice from qualified professionals.

Altery makes no representations, warranties, or guarantees, whether express or implied, that the information in this guide is accurate, complete, or up to date.

This guide is provided for general informational purposes only and does not constitute legal, tax, financial, or other professional advice from ALTERY LTD or its affiliates. It should not be used as a substitute for advice from qualified professionals.

Altery makes no representations, warranties, or guarantees, whether express or implied, that the information in this guide is accurate, complete, or up to date.

This guide is provided for general informational purposes only and does not constitute legal, tax, financial, or other professional advice from ALTERY LTD or its affiliates. It should not be used as a substitute for advice from qualified professionals.

Altery makes no representations, warranties, or guarantees, whether express or implied, that the information in this guide is accurate, complete, or up to date.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Simplify your business finances with Altery

Access mass payment solutions, including SEPA, SWIFT and bank card transactions. Open a business account with us.

Altery is a registered trademark of ALTERY LTD, an Electronic Money Institution (EMI) authorised and regulated in the United Kingdom by the Financial Conduct Authority (FCA), FCA reference number 901037. ALTERY LTD will protect your funds through the safeguarding method and not the Financial Services Compensation Scheme (FSCS).

Altery EU Ltd., incorporated in Cyprus under company number HE 415141, with its registered office at Andrea Kariolou 38, Agios Athanasios, 4102 Limassol, Cyprus, is authorised by the Central Bank of Cyprus as an Electronic Money Institution under the Electronic Money Laws of 2012 and 2018 (Licence No. 115.1.3.61).

Altery EU Ltd. has not yet launched its services. When services become available, client funds will be safeguarded in segregated accounts in accordance with applicable legislation.

All rights reserved. © 2025

Altery is a registered trademark of ALTERY LTD, an Electronic Money Institution (EMI) authorised and regulated in the United Kingdom by the Financial Conduct Authority (FCA), FCA reference number 901037. ALTERY LTD will protect your funds through the safeguarding method and not the Financial Services Compensation Scheme (FSCS).

Altery EU Ltd., incorporated in Cyprus under company number HE 415141, with its registered office at Andrea Kariolou 38, Agios Athanasios, 4102 Limassol, Cyprus, is authorised by the Central Bank of Cyprus as an Electronic Money Institution under the Electronic Money Laws of 2012 and 2018 (Licence No. 115.1.3.61).

Altery EU Ltd. has not yet launched its services. When services become available, client funds will be safeguarded in segregated accounts in accordance with applicable legislation.

All rights reserved. © 2025

Altery is a registered trademark of ALTERY LTD, an Electronic Money Institution (EMI) authorised and regulated in the United Kingdom by the Financial Conduct Authority (FCA), FCA reference number 901037. ALTERY LTD will protect your funds through the safeguarding method and not the Financial Services Compensation Scheme (FSCS).

Altery EU Ltd., incorporated in Cyprus under company number HE 415141, with its registered office at Andrea Kariolou 38, Agios Athanasios, 4102 Limassol, Cyprus, is authorised by the Central Bank of Cyprus as an Electronic Money Institution under the Electronic Money Laws of 2012 and 2018 (Licence No. 115.1.3.61).

Altery EU Ltd. has not yet launched its services. When services become available, client funds will be safeguarded in segregated accounts in accordance with applicable legislation.

All rights reserved. © 2025

Altery is a registered trademark of ALTERY LTD, an Electronic Money Institution (EMI) authorised and regulated in the United Kingdom by the Financial Conduct Authority (FCA), FCA reference number 901037. ALTERY LTD will protect your funds through the safeguarding method and not the Financial Services Compensation Scheme (FSCS).

Altery EU Ltd., incorporated in Cyprus under company number HE 415141, with its registered office at Andrea Kariolou 38, Agios Athanasios, 4102 Limassol, Cyprus, is authorised by the Central Bank of Cyprus as an Electronic Money Institution under the Electronic Money Laws of 2012 and 2018 (Licence No. 115.1.3.61).

Altery EU Ltd. has not yet launched its services. When services become available, client funds will be safeguarded in segregated accounts in accordance with applicable legislation.

All rights reserved. © 2025